miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST054358
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf12536-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTACCGACGGAATTACCGAGGGA

miRNA*
CGTCGGTAGTTCCGTTGGTAAAA

mismatches: 1
bulges: 0

View larger
pre-miRNA
GTTCACAGTTTACCGACGGAATTACCGAGGGAGTTTACCGACAGAAAATTCCGTCGGTAGTTCCGTTGGTAAAAATGACAC

dot-bracket secondary structure
..(((...((((((((((((((((((((.(((((((.(.....).))))))).))))))))))))))))))))..)))...


SIMILARITIES
miRBase no hits

PMRD ptc-miRf11428-akr: 2e-26

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record





Liczniki na strone;